Program
→ Please click on the title to the see the abstract (if available).
| Sunday, October 25 | |
| 18:00 - 20:00 | Registration |
| 19:00 - 21:00 | Welcome reception |
| Monday, October 26 | |
| 08:45 - 09:00 | Frank Jülicher (Director MPIPKS) & Scientific Coordinators |
| Opening | |
| Proteomics I - Chair Kathryn Lilley | |
| 09:00 - 09:05 | Chair: Introduction to the session |
| 09:05 - 09:55 | Ruedi Aebersold (ETH Zurich) |
| Mass spectrometric methods to measure dynamic protein interaction networks | |
| 09:55 - 10:45 | Konrad Büssow (Helmholtz Centre for Infection Research) |
| Systematic expression of mammalian proteins for structural studies | |
| 10:45 - 11:15 | Coffee break |
| 11:15 - 12:05 | Madan Babu Mohan (University of Cambridge) |
| Intrinsically unstructured proteins: Regulation and disease | |
| 12:05 - 12:55 | Petra Schwille (Technical University Dresden) |
| Single molecule analysis of morphogen spreading in living embryos | |
| 12:55 - 13:00 | Concluding discussion |
| 13:00 - 14:10 | Lunch |
| Protein evolution - Chair Edward Marcotte | |
| 14:10 - 14:15 | Chair: Introduction to the session |
| 14:15 - 15:05 | Eugene Shakhnovich (Harvard University) |
| Bridging scales in biology: From atoms to organisms | |
| 15:05 - 15:30 | Ugo Bastolla (Universidad Autonoma Madrid) |
| Extreme mutation bias favors protein folding stability in the evolution of small populations | |
| 15:30 - 15:55 | Andrey Cherstvy (Research Center Jülich) |
| Facilitated protein diffusion on DNA and DNA-protein electrostatic recognition | |
| 15:55 - 16:00 | Concluding discussion |
| 16:00 - 16:30 | Coffee break |
| 16:30 - 17:30 | PHPPBC09 Colloquium - Chair Frank Jülicher (MPIPKS) |
| Judith Frydman (Stanford University) | |
| Molecular origami: Protein folding and misfolding in health and disease | |
| 19:00 - 20:30 | Dinner |
| 20:30 - ... | Discussion session |
| Tuesday, October 27 | |
| Modeling cell behavior - Chair Michael Schroeder | |
| 09:00 - 09:05 | Chair: Introduction to the session |
| 09:05 - 09:55 | Stephan Grill (MPIPKS Dresden) |
| Active forces and flows in the establishment of cellular polarity | |
| 09:55 - 10:45 | Gian Gaetano Tartaglia (University of Cambridge) |
| Towards quantitative predictions in cell biology using chemical properties of proteins | |
| 10:45 - 11:15 | Coffee break |
| 11:15 - 12:05 | Harmen Bussemaker (Columbia University) |
| Learning mechanistic models of gene expression regulation from natural sequence variation | |
| 12:05 - 12:30 | Christof Winter (Technical University Dresden) |
| Predicting protein-RNA interactions in diabetes - How a novel computational method helps to identify regulators of insulin secretion | |
| 12:30 - 12:55 | Alessandro Barducci (ETH Zurich) |
| Extending the capabilities of all-atom molecular dynamics simulations: A well-tempered approach to protein conformational dynamics | |
| 12:55 - 13:00 | Concluding discussion |
| 13:00 - 14:10 | Lunch |
| Protein folding and misfolding I - Chair Amnon Horovitz | |
| 14:10 - 14:15 | Chair: Introduction to the session |
| 14:15 - 15:05 | Salvador Ventura (Universitat Autònoma de Barcelona) |
| Towards a model of protein aggregation in bacteria | |
| 15:05 - 15:30 | Fabio Pichierri (Tohoku University) |
| What is the relationship between electronic structure and protein dynamics? | |
| 15:30 - 15:55 | Anne Tuukkanen (Technical University Dresden) |
| A novel approach to structural modelling of large protein complexes | |
| 15:55 - 16:25 | Coffee break |
| 16:25 - 16:50 | Raul Mendez (Centre for Molecular Biology, Madrid) |
| TNM: A new coarse-grained elastic network model in torsional space | |
| 16:50 - 17:15 | Mark Tsechansky (University of Texas at Austin) |
| Protein punctation in yeast - A generic protein aggregation phenomenon with evolutionary implications | |
| 17:15 - 17:20 | Concluding discussion |
| 19:00 - 20:30 | Dinner |
| 20:30 - ... | Poster session |
| Wednesday, October 28 | |
| Proteomics II - Chair Konrad Büssow | |
| 09:00 - 09:05 | Chair: Introduction to the session |
| 09:05 - 09:55 | Kathryn Lilley (University of Cambridge) |
| Using proteomics approaches to determine sub-cellular location of proteins | |
| 09:55 - 10:45 | Matthias Mann (MPI for Biochemistry, Martinsried) |
| Quantitative, large-scale phosphoproteomics to elucidate cellular signal processing | |
| 10:45 - 10:50 | Group photo |
| (to be published on the website) | |
| 10:50 - 11:15 | Coffee break |
| 11:15 - 12:05 | Søren Brunak (Technical University of Denmark, Lyngby) |
| Phenotype-specific protein network biology | |
| 12:05 - 12:10 | Concluding discussion |
| 12:10 - 13:45 | Lunch |
| 14:00 | Excursion |
| (guided tour at the Semper Opera, guided city tour incl. snack, visit of the Historic Green Vault) | |
| 19:30 | Workshop Dinner at the restaurant ``Carolaschlösschen'' |
| Thursday, October 29 | |
| Protein interaction - Chair Richard N. Day | |
| 09:00 - 09:05 | Chair: Introduction to the session |
| 09:05 - 09:55 | Patrick Aloy (Institute for Research in Biomedicine, Barcelona) |
| Structural systems biology: Modelling protein interactions and complexes | |
| 09:55 - 10:45 | Andreas Plückthun (University of Zurich) |
| Stable binding proteins by design and evolution: Towards a modular recognition code | |
| 10:45 - 11:15 | Coffee break |
| 11:15 - 12:05 | Michael Schroeder (Technical University Dresden) |
| Network compression: Theory, algorithms and applications in disease | |
| 12:05 - 12:55 | Jacques Colinge (Research Center for Molecular Medicine, Vienna) |
| t.b.a. | |
| 12:55 - 13:00 | Concluding discussion |
| 13:00 - 14:10 | Lunch |
| Protein expression - Chair Gian Gaetano Tartaglia | |
| 14:10 - 14:15 | Chair: Introduction to the session |
| 14:15 - 15:05 | Nick Luscombe (European Bioinformatics Institute, Cambridge) |
| Nucleoporins, chromosomal organisation and gene regulation | |
| 15:05 - 15:55 | Claus O. Wilke (University of Texas at Austin) |
| Mistranslation-induced protein misfolding as a dominant constraint on coding- sequence evolution | |
| 15:55 - 16:25 | Coffee break |
| 16:25 - 17:15 | Richard N. Day (Indiana University School of Medicine, Indianapolis) |
| Monitoring dynamic protein interactions in the living cell nucleus | |
| 17:15 - 18:05 | Edward Marcotte (University of Texas at Austin) |
| Insights from proteomics into cellular evolution and surprising disease models | |
| 18:05 - 18:10 | Concluding discussion |
| 19:00 - 20:30 | Dinner |
| 20:30 - ... | Poster session |
| Friday, October 30 | |
| Protein folding and misfolding II - Chair Salvador Ventura | |
| 09:00 - 09:05 | Chair: Introduction to the session |
| 09:05 - 09:55 | Daniel Müller (Technical University Dresden) |
| Quantifying interactions guiding membrane protein folding, unfolding and function by single-molecule force spectroscopy and microscopy | |
| 09:55 - 10:20 | Andrey Solov'yov (Frankfurt University) |
| Statistical mechanics of polypeptide and protein folding in vacuum and water environment | |
| 10:20 - 10:45 | Tihamer Geyer (Saarland University) |
| Coarse grained simulations of a small peptide: Effects of finite damping and hydrodynamic interactions | |
| 10:45 - 11:15 | Coffee break |
| 11:15 - 12:05 | Amnon Horovitz (Weizmann Institute of Science, Rehovot) |
| Linking allostery in chaperonins to protein folding | |
| 12:05 - 12:20 | Concluding discussion |
| 12:20 - 12:25 | Closing |
| 12:30 | Lunch |
Last update: 29/10/2009
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