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Input output
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09:00 - 09:15
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Introduction - moderator Adrienne Fairhall
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09:15 - 10:00
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Yasmine Meroz
(Tel Aviv University)
Plant tropisms as a window on memory, computation and actuation in distributed systems
Plants solve complex navigational problems, continuously negotiating their unstructured and changing environment. They strategically redirect their growth to optimize photosynthesis in response to fluctuating light sources, while minimizing mechanical strains. While they have no brain or neural system, they can sense their environment, process sensory information, and plan strategic growth movements. Since plants are distributed systems, with no central control, underlying computational processes must be emergent properties of the tissue. I will discuss how plants accomplish decentralized computation at the tissue level, underpinning integration of sensory information over space and time.
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10:00 - 11:00
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coffee & discussion
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11:00 - 11:30
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Daniel Maria Busiello
(University of Padova)
Fast nonlinear integration drives accurate signal encoding in large multiscale systems
Biological and artificial systems encode information through several complex nonlinear operations, making their exact study a formidable challenge. These internal mechanisms often occur across multiple timescales and process external signals to enable functional output responses. In this work, we focus on two widely implemented paradigms: nonlinear summation, where signals are first processed independently and then combined; and nonlinear integration, where they are combined first and then processed. We study a general model where the input signal is propagated to an output unit through a processing layer via nonlinear activation functions. Further, we distinguish between the two cases of fast and slow processing timescales. We demonstrate that integration and fast-processing capabilities systematically enhance input-output mutual information over a wide range of parameters for large-scale systems, while simultaneously enabling tunable input discrimination. Moreover, we reveal that high-dimensional embeddings and low-dimensional projections emerge naturally as optimal competing strategies. Our results uncover the foundational features of nonlinear information processing with profound implications for both biological and artificial systems.
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11:30 - 12:15
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Jennifer Schwarz
(Syracuse University)
to be announced
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12:15 - 13:15
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lunch
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13:15 - 14:00
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discussion
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Memory
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14:00 - 14:15
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Introduction - moderator Yonatan Loewenstein
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14:15 - 15:00
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Adam J. Engler
(University of California, San Diego)
Cell intrinsic and extrinsic signals drive “memory” in cancer
While mechanobiological regulation of many epithelial carcinomas has been well-studied for decades, its impact on oral squamous cell carcinoma (OSCC) is less understood, despite overall survival rates for OSCC significantly dropping once the disease has metastasized. Here we examined how niche stiffness drives epithelial-to-mesenchymal transition (EMT), how it enables OSCC cells to acquire “mechanical memory”, and what mechanisms are used to recall such memories. We found that invasive cells overexpress myosin II (vs. noninvasive cells) consistent with OSCC. However, prolonged exposure of noninvasive cells to a stiff niche or contractile agonists up-regulated myosin and EMT markers and enabled them to migrate as fast as invasive cells, which persisted even when the niche softened and indicated “memory” of their prior niche. Stiffness-mediated mesenchymal phenotype acquisition required AKT signaling and was also observed in patient samples, whereas phenotype recall on soft substrates required focal adhesion kinase (FAK) activity. Phenotype durability was further observed in transcriptomic differences between preconditioned cells cultured without or with FAK or AKT antagonists, and such transcriptional differences corresponded to discrepant patient outcomes. While intrinsic mechanisms are important, cell extrinsic signaling within tumor has not been studied well. Co-cultlure of heterotypic OSCC cell lines enhanced the invasiveness of naïve cells via a specific cytokine signature. Supplementing normal growth media with those cytokines comparatively increased naïve cells’ motility via MAPK and AKT signaling pathways, and their withdrawal did not alter the phenotype. These data suggest that mechanical memory, mediated by contractility and paracrine signals via distinct kinase signaling, may be necessary for cancer dissemination.
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15:00 - 15:30
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Yoav Lahini
(Tel Aviv University)
Memory and adaptation via coupled instabilities - from crumpled sheets to smart mechanical metamaterials
Take a thin plastic sheet and crumple it into a ball. It might not be immediately evident, but this seemingly mundane object exhibits many of the hallmark behaviors shared by non-equilibrium disordered systems. These include logarithmic aging spanning many timescales, intermittent mechanical responses, crackling noise, avalanche dynamics, and a range of memory effects. In particular, the sheet can adapt its response to repeated external driving, and thereby consolidate a memory of the drive. Multiple such memories can be encoded in and retrieved from a single sheet.
Using experiments that combine global mechanical measurements, local probing, acoustic measurements, and 3D imaging of crumpled sheets, we build a mesoscopic description of their mechanics. These reveal that the adaptation and memory behaviors emerge from the collective dynamics of mesoscopic, bistable elements within the sheet: localized geometric instabilities that act as coupled, hysteretic, two-state degrees of freedom.
Based on this picture, we develop a numerical model of a disordered network of bistable elastic elements that corroborates all our observations. The model highlights the role of interactions and frustration between instabilities in driving these behaviors.
Finally, inspired by our findings, we create mechanical metamaterials composed of highly frustrated by-stable elements, and show that these can be designed to perform additional information processing tasks such as sequence dependence.
D. Shohat, D. Hexner and Y. Lahini, PNAS 119 (28) 2200028119 (2022)
D. Shohat and Y. Lahini, PRL 130, 048202 (2023)
Sirote-Katz, Shohat, et al., Nat. Comm. (2024)
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15:30 - 16:30
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coffee & discussion
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16:30 - 17:15
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Leonid Mirny
(MIT)
Chromosomes as memory machines
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17:15 - 18:00
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Hanna Salman
(University of Pittsburgh)
Quantitative characterization of non-genetic memory and phenotype dynamics in bacteria
Non-genetic inheritance plays a fundamental role in determining cellular properties in future generations and in restraining the proliferation of non-genetic cell-to-cell variation over time. This in turn can influence the cell’s ability to respond and adapt to new environmental conditions. It is, therefore, important to be able to measure it and quantitatively characterize it reliably. In this talk I will present our newly developed method that allows measuring and characterizing non-genetic inheritance (or cellular memory) in the simple bacterial model organism E. coli. The method utilizes a novel microfluidic device, coined “sisters machine”, that enables us to track and measure how two sister cells become different from each other over time. Our measurements reveal how non-genetic inheritance contributes to regulating the various cellular properties (e.g. size, growth rate, etc.) in future generations. We find that non-genetic cellular memory is property specific, and can last up to ∼10 generations, but decreases under stress. The results obtained from this study can help uncover mechanisms of non-genetic inheritance and adaptation to stress.
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18:00 - 18:30
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discussion
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18:30 - 19:30
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dinner
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19:30 - 21:30
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poster session
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