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Session 4: Complex Environments
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09:00 - 09:30
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Jun-ichi Fukuda
(Kyushu University)
Numerical study of the dynamics of bacterial suspensions under spatial confinement
Bacterial suspensions are a typical and well-known example of active matter comprising self-propelling components. Here we present two numerical studies on the dynamics of bacterial suspensions, particularly focusing on their behavior under spatial confinement. One relies on the continuum description of the suspension in terms of the velocity field, known as the Toner-Tu-Swift-Hohenberg equation. A slip boundary condition is implemented at the confining boundaries. We find that an edge current of the suspension emerges and exhibits temporal oscillation [1]. The other is an agent-based one that models a bacterial suspension as a collection of self-propelled rods. Various types of confinements and obstacles involving curved boundaries are considered. We find that the rods align normal to the boundary to form clusters, and the clusters collectively move along the boundary [2].
[1] Matsukiyo and Fukuda, Phys. Rev. E 109, 0546406 (2024).
[2] Kaneko and Fukuda, in preparation.
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09:30 - 09:50
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Gonçalo Antunes
(Technische Universität Berlin)
Corrugated channels can filter ciliated microorganisms
Many microorganisms (e.g. Paramecium) move by a carpet of cyclically beating cilia that cover their surface. These cilia often beat in an organized fashion, such that the beating phases form a traveling wave, referred to as a metachronal wave. Often, studies on the swimming of such microorganisms neglect the metachronal dynamics. We show that such an approach is not sufficient if the organism swims in corrugated microchannels.
By modeling the motion of the cilia as a time-varying effective slip velocity applied on the microorganism's surface, which we approximate as an infinite cylinder, we show analytically that the swimming speed is sensitive to the corrugation height, provided that the wavelength of the corrugation matches that of the metachronal wave. Indeed, the direction of motion itself may invert with respect to swimming in bulk fluid, with the channel then acting as a filter which blocks the passage of some microorganisms, but allows others to pass through. We also show that the interplay between the corrugation and the slip velocity profile allows microorganisms to swim with zero time-averaged slip velocity, which would not move in bulk fluid.
Finally, we complement our theory with preliminary results from hydrodynamic simulations for microorganisms of finite length.
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09:50 - 10:10
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Kuntal Patel
(Max Planck Institute for Solar System Research)
Instability of active fluid interfaces
Several chemical and biomedical applications require systematic processing of micron-sized fluid samples. To realize this, so-called microfluidic lab-on-a-chip devices with micron-sized channels are widely used. Often, one needs to manipulate two layers of immiscible fluids in such channels. The interface separating the two fluid components costs energy, which is quantified by surface tension. Thus, any deformation of a planar fluid interface increases energy.
In our work, we assign one more property to the interface in the form of dipolar forces acting perpendicular to the interface. We name it the \emph{activity} of the interface, and it is achieved by covering the interface with active particles. The notion of activity is inspired by swimming microorganisms. Using computer simulations, we discover that the presence of activity affects the stability of the interface. We notice that dipolar forces pointing toward the interface counter the stabilizing effect of surface tension, so that the interface deforms. In contrast, force components pointing away stabilize the interface against perturbation. The destabilizing activity might seem undesirable at first. However, we demonstrate that one can leverage such activity-induced instability to generate microfluidic droplets. In addition, we can also control droplet formation by varying the magnitude of dipolar forces in real time, which can be accomplished using light-sensitive active particles in practice.
Realizing our proposed microfluidic design will impact various real-life applications, e.g., encapsulation
of biological cells for tissue engineering or for early disease diagnosis.
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10:10 - 10:30
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Antonio Stocco
(CNRS)
Emerging Dynamics of Active Brownian Colloids interacting with Soft Membranes
Motion of active Brownian particles is strongly affected by confinement effects, which impact the persistence of the ballistic dynamics and can guide transitions and instabilities when dealing with deformable interfaces.
Here, I will present some experimental results describing the dynamics of active colloids interacting with soft fluctuating membranes. Our experimental systems are composed of Giant unilamellar vesicles (GUVs) with tunable membrane tension and Janus self-propelled colloids showing different hydrodynamic and particle-membrane interactions. We were able to observe emerging dynamics such as particle orbital motion around the vesicle [1], active vesicle transport [2] and autonomous particle engulfment by the vesicle membrane [3].
References:
[1] V Sharma, E Azar, AP Schroder, CM Marques, A Stocco. Active colloids orbiting giant vesicles, Soft Matter 2021, 17, 4275.
[2] V Sharma, CM Marques, A Stocco. Driven Engulfment of Janus Particles by Giant Vesicles in and out of thermal equilibrium, Nanomaterials 2022, 12, 1434.
[3] F Fessler, M Wittmann, J Simmchen, A Stocco. Dynamics of Active Colloid Engulfment by Giant Lipid Vesicles, Soft Matter 2024, 20, 5904.
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10:30 - 11:00
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Group photo & coffee break
(will be published on the workshop's website)
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Session 4: Complex Environments
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11:00 - 11:30
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Robert Großmann
(University of Potsdam)
Intermittent active diffusion in living systems: from bacteria in disordered environments to active biohybrids
In this talk, I will discuss two types of intermittent active diffusion processes as observed in experiments of (i) bacterial navigation through porous gels and (ii) biohybrid colloidal transport driven by living cells.
In the first part, we address the question how bacteria navigate in their habitat purposefully and efficiently, e.g., in the soil, which is a complex, structured environment. Combining experiments and active particle modeling, we address the interrelation of bacterial navigation at the microscale and their large-scale spreading in heterogeneous environments considering both, undirected motion in a porous medium as well as biased motion in chemical gradients. Remarkable motility characteristics, including transient subdiffusion, primarily due to intermittent mechanical trapping with power-law distributed trap times, are revealed. Furthermore, we provide evidence that bacteria can perform chemotaxis in porous media even though their mean free path is severely restricted by adjusting their change in swimming direction upon a turn event, so that the direction of the next run phase is biased towards the source of the chemoattractant (turn angle bias). Active particle modeling, based on the experimentally inferred statistical properties of the swimming pattern, indicates that turn angle bias is the predominant chemotaxis strategy of bacteria in porous media.
In the second part, we describe the transport of polystyrene beads whose motion is actively driven by cells via direct mechanical contact. We will first discuss the stochastic dynamics of a single cell-cargo pair, particularly focusing on the existence of an optimal cargo size that enhances the diffusion of the load-carrying cells, even exceeding their motility in the absence of cargo, and estimate the active forces exerted by cells to move colloids. Afterwards, we present the collective transport of micron-sized particles on a monolayer of motile cells. The transport of colloids shows a crossover from superdiffusive to normal-diffusive dynamics. The particle displacement distribution is distinctly non-Gaussian even at macroscopic timescales exceeding the measurement time. We obtain the distribution of diffusion coefficients from the experimental data and introduce a model for the displacement distribution that matches the experimentally observed non-Gaussian statistics. We argue why similar transport properties are expected for many composite active matter systems. These results can provide the basis for the future design of cellular microcarriers and for more advanced transport tasks in complex, disordered environments, e.g. tissues.
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11:30 - 11:50
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Yanis Baouche
(Max Planck Institute for the Physics of Complex Systems)
Interplay of Diffusion and Hydrodynamics Governs First-passage-time Statistics of Swimming Microorganisms
Biological swimmers are intrinsically active and exhibit self-propulsion mechanisms optimized for survival and foraging tasks. Quantifying the time required for them to travel specific distances is challenging due to the complex coupling between swimming orientation and positional dynamics. Here, we investigate the first-passage-time (FPT) properties of active Brownian particles to reach an absorbing wall in two dimensions [1]. Employing a perturbation approach, we obtain exact analytical predictions for the survival and FPT distributions for low activity. Using the median as a metric, we quantify the anisotropy emerging from the starting angle and find that it becomes more pronounced when the initial distance from the wall is comparable to the length they travel before reorienting due to rotational diffusion.
We further numerically study hydrodynamic effects in "wet" systems, where the confined geometry leads to height-dependent diffusion coefficients and backflows that affect agents differently depending on their swimming mechanism's flow signature. Our results show that hindered diffusion near the wall can increase the median FPT by orders of magnitude compared to "dry" agents. Additionally, due to the competition between noise and hydrodynamic attraction, pushers tend to need less activity to reach the boundary than pullers do.
[1] Y. Baouche, M. Le Goff, C. Kurzthaler, T. Franosch, Physical Review E 111, 054113 (2025)
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11:50 - 12:10
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Katja Taute
(Leipzig University)
Motility-driven self-organization of bacterial populations
As the simplest living organisms on our planet, yet capable of complex behaviors such as proliferation and navigation, bacteria present compelling model systems for a wide range of fundamental questions in the field of active matter physics. Bacterial chemotaxis, i.e. biased movement relative to chemical concentration gradients, has become a paradigm for low-Reynolds number motility, information processing, navigation, and collective dynamics.
Chemotaxis and proliferation create feedback between bacterial population densities and chemical concentration fields and can give rise to collective range expansions driven by chemotactic traveling waves. The overall population growth depends on both the chemotactic navigation performance and the individual growth rate, yet in nature these two parameters are typically subject to a tradeoff due to resource limitation. Trade-offs can be addressed by different behavioral strategies, setting the stage for a range of possible ecological dynamics in mixed populations.
I will discuss our experimental and theoretical efforts to qualitatively and quantitatively understand the spatio-temporal self-organization of mixed microbial populations based on their navigation and proliferation properties.
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12:10 - 12:30
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Florence Elias
(Université Paris Cité)
Marine foam: capture of phytoplankton in foam.
A massive formation of stable sea foam is regularly observed on certain coastlines. These naturally occurring foams are associated with a loss of phytoplankton biomass and biodiversity in the seawater. We are investigating whether the phytoplankton advected into the foam during its formation remains trapped in the complex network of internal channels in the foam.
In this talk, I will present experiments carried out in the laboratory to study the retention in a liquid foam of a model phytoplankton organism: the unicellular alga Chlamydomonas reinhardtii (CR), which is bi-flagellate and therefore motile. We measured the escape dynamics of CR cells from the foam. A comparison between live and dead cells shows that live CR cells tend to be retained in the foam. Finally, I will discuss the microscopic mechanisms that can lead to this entrapment, which raises the question of the transport of microswimmers in confined and environments under flow.
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12:30 - 14:00
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Lunch Break
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Session 5: Collectives I
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14:00 - 14:30
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Cécile Cottin-Bizonne
(Université Lyon 1 - CNRS)
From Microrheology of Active Colloids to the Self-Assembly of Magnetotactic Bacteria
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14:30 - 15:00
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Jens Elgeti
(Forschungszentrum Jülich)
Mechanical organization of Stem Cells in Tissues
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15:00 - 15:20
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Rao Vutukuri
(University of Twente)
Shaping Phase Behavior in Active Rod Systems: Swarming, Flocking, Active Turbulence, and Jamming
Active soft matter systems continue to captivate researchers due to their relevance to biological and synthetic systems alike. Understanding and controlling emergent behaviors in these systems is essential for designing reconfigurable synthetic materials, advancing micro-robotics, and exploring collective cell migration. Among various synthetic active systems, self-propelled rods are currently a subject of great interest in active soft matter physics, serving as a minimal model due to their ability to mimic and provide deeper insights into biological phenomena such as bacterial swarms and biopolymers like microtubule assemblies.
In equilibrium systems, the shape anisotropy of individual building blocks is known to play a crucial role in creating exotic structures and controlling phase behavior. However, whether and how this shape anisotropy influences internally driven, out-of-equilibrium synthetic systems remains elusive. Here, we present combined experimental and simulation studies using colloidal self-propelled rods to elucidate when and how shape-induced alignment, aspect ratio, steric interactions, hydrodynamic interactions, and density fluctuations drive self-organization in active matter, drawing inspiration from the rich collective dynamics observed in bacterial systems such as E. coli.
We demonstrate that, as particle concentration increases, the system undergoes a distinct sequence of transitions, from run-and-tumble motion to swarming, active turbulence, flocking, formation of large clusters, and ultimately jamming [2]. By systematically varying rod aspect ratio and particle density, we construct a comprehensive state diagram mapping these distinct collective phases. We further characterize the spatiotemporal evolution of these states through analyses of velocity correlations and giant number fluctuations.
Our findings highlight how particle anisotropy, hydrodynamics, and density govern emergent structures, providing novel pathways to design and control collective behaviors in synthetic active materials and establishing clear parallels with biological phenomena, such as bacterial swarming and biofilm formation.
Keywords: Self-propelled rods, Active Turbulence, Flocking, Active Matter, Self-organization
Acknowledgements: We gratefully acknowledge the Netherlands Organization for Scientific Research (NWO) for funding through the NWO-M1 and XS grants.
References
[1] M. C. Marchetti, et al., Hydrodynamics of soft active matter, Reviews of modern physics 85, 1143
1189, 2013.
[2] Yogesh Shelke, Anpuj Nair S, and Hanumantha Rao Vutukuri, Shaping Phase Behavior in Active
Rod Systems: Swarming, Flocking, Active Turbulence, and Jamming, Under Review.
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15:20 - 15:40
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Alexis Poncet
(CNRS & ENS Lyon)
Collective dynamics of active particles with memory
Systems of interacting active particles have been the subject of extensive theoretical research, particularly to explore their phase diagrams [1] and correlation functions [2]. Recently, experimental studies have revealed strong memory effects when these active systems are immersed in a viscoelastic medium, leading to intriguing behaviors in both individual [3] and collective [4] dynamics. While memory effects have been well studied in equilibrium systems, their impact on out-of-equilibrium active phases remains a largely open topic.
In this talk, I will present recent and ongoing work investigating the dynamics of active particles embedded in a viscoelastic medium, modeled by a memory kernel acting on individual particles. The primary focus will be on how memory effects modify motility-induced phase separation (MIPS) [1] at high density and activity. For the simplest model, which incorporates only a memory kernel, I will demonstrate that memory hinders motility-induced phase separation, resulting in a fluidized system even under high activity. For a more realistic model, where individual particles exhibit chiral trajectories [3], the system remains fluid but shows striking statistical behavior reminiscent of colloidal gels. I will discuss the implications of these findings and outline future directions, including the integration of hydrodynamic interactions between particles.
[1] P. Digregorio et al., Phys. Rev. Lett. 121, 098003 (2018).
[2] A. Poncet, O. Bénichou, V. Démery & D. Nishiguchi, Phys. Rev. E 103, 012605 (2021).
[3] N. Narinder, C. Bechinger & J. Gomez-Solano, Phys. Rev. Lett. 121, 078003 (2018).
[4] S. Liu, S. Shankar, M. C. Marchetti & Y. Wu, Nature 590, 80 (2021).
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15:40 - 16:00
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Sagnik Garai
(Max Planck Institute for the Physics of Complex Systems)
Hydroelastic Scattering and Trapping of Microswimmers
We study the hydrodynamic interactions of swimming microorganisms with nearby deformable bound-
aries omnipresent in their natural habitats. The boundary, characterized by its surface tension and bending
rigidity, is deformed by the flow produced by the microswimmer and thereby modifies its swimming veloc-
ities. Describing the far-field flow of the agent as a combination of a force and torque dipole, we compute
small instantaneous deformations of the boundary. We further use the Lorentz reciprocal theorem to obtain
leading-order corrections of its swimming velocities and compute a phase diagram based on the swimmer’s
initial orientation and the material properties of the deformable boundary. Our results reveal that pushers
can both re-orient away from the boundary, leading to overall hydroelastic scattering, or become trapped
near the boundary, while pullers exhibit enhanced trapping. These findings demonstrate that the complex
hydroelastic interactions can generate behaviors that are fundamentally different to swimming near planar
walls.
Ref: S. Garai, et. al., arXiv preprint arXiv:2502.02462
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16:00 - 16:30
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Coffee Break
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Session 6: Synchronization
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16:30 - 17:00
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Fanlong Meng
(Chinese Academy of Sciences)
Hydrodynamics-mediated self-organisation: cilia beating and multiflagellated microswimming
I will present our recent works on how hydrodynamics can determine the physical responses of (1) cilia and (2) a multiflagellated microswimmer. Based on the analytical modelling and numerical simulations, we try to understand how complex living systems can function by only utilizing simple physical rules.
References:
[1] Cheng, Vilfan, Wang, Golestanian, and FM, Journal of the Royal Society Interface 21, 20240221 (2024).
[2] Hu, and FM, Physical Review Letters 132, 204002 (2024).
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17:00 - 17:30
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Toshihiro Omori
(Tohoku University)
Self-organization of spermatozoa via unsteady elastohydrodynamic interactions
Collective swimming of sperm are observed in various species, suggesting that grouping enhances motility. In this study, we developed a numerical model of sperm computed by fluid-structure interactions between multiple flagella, showing that hydrodynamic interactions allow the sperm model to form polar orders, in which they swim alongside each other. A wave propagation model controlled by the time derivative of flagellar curvature was introduced to represent flagellar synchronization via hydrodynamic interactions. The polar state resulted in hydrodynamic flagellar synchronization due to relatively long contact time. This increased swimming speed and flagellar beat speed by around 10% compared to no synchronization. Our results showed that polar ordering enables swimming faster and more efficient swimming than solitary swimming.
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17:30 - 17:50
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Thomas Fai
(Brandeis University Waltham)
Advection-reaction-diffusion model of polymerization-based active matter
Experiments show that, by placing colloidal beads coated with an actin branching activator in a solution with purified protein, it is possible to recapitulate in vitro the emergence of comet tails that generate propulsive motion through actin polymerization. Spontaneous processive motion is achieved by chemophoretic particles via mechano-chemical coupling. In this talk, we will describe a theoretical model of the spontaneous chemophoresis in synthetic actin comets and their resulting flocking behavior. To model the motion of synthetic actin comets, we apply physical first principles such as chemical advection/diffusion/reaction and solve the resulting equations to obtain the temporal evolution of beads and comet tails. In addition to movement in the bulk, we simulate the behavior of comet tails in complex geometries such as networks of microfluidic channels reminiscent of crowded cellular geometries.
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18:00 - 19:00
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Dinner
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19:00 - 21:00
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Poster Session I
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